AimThe goal of this study was to evaluate consistency among multiple connectivity models for jaguar and puma across Panama to evaluate the plausible current patterns of habitat connectivity for these and potentially other species in this critical biogeographic linkage zone.ApproachWe compared 72 different models of landscape connectivity for both large felids using both empirically based and expert opinion derived resistance layers. We conducted resistant kernel modeling with different dispersal abilities to reflect uncertainty in the movement potential of the two species. We applied three transformations to the resulting connectivity surfaces to account for uncertainty about the shape of the dispersal kernel function. We then evaluated the similarities and differences among these connectivity models, identifying several factors that drive their differences. We quantified the factors that drive differences in connectivity predictions using surface correlation, Mantel testing, and agglomerative hierarchical clustering.ResultsWe found that the main differences among predicted connectivity surfaces were related to species and resistance modeling approach, with relatively little consistent difference related to dispersal ability and nonlinear kernel transformation. Based on the ensemble connectivity prediction across the 72 models, we identified two major core areas, corresponding to the eastern and western portions of the central mountain range, significant attenuation of connectivity in lowland and developed areas of Panama, a major breakage in connectivity in the Canal Zone spanning the width of the country, and weak but potentially critical movement routes connecting the two core areas across the Canal Zone.ImplicationsThis paper contributes to both a theoretical and practical understanding of the functional connectivity of large felids, confirming the strong effect of differences in source points and resistance surfaces on connectivity predictions and identifying and mapping key core areas, barriers, and potential corridors for carnivore movement across the critical Pan-American linkage of the Isthmus of Panama.