We observed what appeared to be an unstudied regime of laser-matter interactions, when modest-intensity, modest-fluence laser pulses struck weakly-absorbing, silica-rich material that was submerged in water: material was efficiently removed from the surface and colorless particles were left behind, decorating crater’s surface. One explanation for this color loss was a transient dissolution of the material, due to the pressure and temperature pulse caused by the laser absorption and thermally-driven expansion of the material. However, other explanations were possible. Here, we have studied this process with laser intensity and fluence so low that no crater was formed, when a sample of natural quartzite rock was submerged in deionized water and illuminated with 40 MW cm−2, 527 nm laser pulses. After one hundred laser pulses, the treated surface of the originally colored quartzite was colorless. We cut the quartzite in cross section and examined the colorless material on the surface with x-ray fluorescence. We report that the transition element Fe was found to be significantly depleted in this colorless layer, while Si was not. This supports the hypothesis that the laser exposure led to a transient hydrothermal dissolution of the material, followed by a recrystallization process of the SiO2 that preferentially released iron oxides into the submerging water.