This study investigates Raman scattering from a pyrazine molecule adsorbed on gold nanorod surfaces using the time-dependent density functional tight-binding (TD-DFTB) method. We analyze surface-enhanced Raman scattering (SERS) for two configurations: one where the molecule is adsorbed on a single gold nanorod forming a Au-pyrazine complex, and another where it forms a nanojunction Au-pyrazine-Au dimer system. These two configurations offer distinct chemical environments for the molecule and different local field enhancements, with the dimer systems generating enhanced hotspot regions at the junctions. We present results for nanojunction and Au-pyrazine-Au dimer structures, for variable nanogap sizes that lead to shifts in the plasmon energies. The study identifies contributions to the SERS enhancements from chemical, electromagnetic, and resonance charge transfer mechanisms. Our results show that the chemical mechanism provides enhancement factors in the range of 10 2 − 10 3 , while the electromagnetic enhancements are on the order of 10 4 −10 6 for monomer systems and 10 6 −10 8 for dimer structures. Charge transfer resonances show enhancements in the 10 2 −10 3 range, depending on the resonance energy relative to the plasmon energy. We demonstrate all the results using a nanorod with a length of 5.3 nm and a width of 0.52 nm, containing 121 gold atoms.