Suncheonman Bay, Korea’s most representative estuary, is an invasive coastal wetland composed of 22.6 km2 of tidal flats surrounded by the Yeosu and Goheung Peninsulas. In January 2006, this region was registered in the Ramsar Convention list in Korea, representing the first registered wetland. Estuaries are generally known to have high species diversity. In particular, several studies have been conducted on planktonic and epipelic diatoms as primary producers. Suncheonman Bay has already been involved in many biological and geochemical studies, but fossil diatoms have not been evaluated. Therefore, we investigated fossil diatoms in Suncheonman Bay and introduced sub-fossil diatoms recorded in Korea. One sedimentary core has been extracted in 2018. We identified 87 diatom taxa from 52 genera in the SCW03 core sample. Of these, six species represent new records in Korea: Cymatonitzschia marina, Fallacia hodgeana, Navicula mannii, Metascolioneis tumida, Surirella recedens, and Thalassionema synedriforme. These six newly recorded diatom species were examined by light microscopy and scanning electron microscopy. The ecological habitats for all the investigated taxa are presented.