We define a cover of a Latin square to be a set of entries that includes at least one representative of each row, column and symbol. A cover is minimal if it does not contain any smaller cover. A partial transversal is a set of entries that includes at most one representative of each row, column and symbol. A partial transversal is maximal if it is not contained in any larger partial transversal. We explore the relationship between covers and partial transversals. We prove the following: (1) The minimum size of a cover in a Latin square of order n is n + a if and only if the maximum size of a partial transversal is either n − 2a or n − 2a + 1. (2) A minimal cover in a Latin square of order n has size at most μ n = 3(n + 1/2 − √ n + 1/4). (3) There are infinitely many orders n for which there exists a Latin square having a minimal cover of every size from n to μ n . (4) Every Latin square of order n has a minimal cover of a size which is asymptotically equal to μ n . (5) If 1 k n/2 and n 5 then there is a Latin square of order n with a maximal partial transversal of size n − k. (6) For any ε > 0, asymptotically almost all Latin squares have no maximal partial transversal of size less than n − n 2/3+ε .