Hydraulic force, a novel mechanism shown to aid diastolic filling, can be calculated by assessing the geometrical relationship between the left ventricular and atrial short-axis areas (atrioventricular area difference, AVAD). During exercise both ventricular and atrial volumes change due to altered loading conditions compared to rest, but it is unknown to what extent this affects AVAD. The aim of this study was to investigate if AVAD differs when going from rest to exercise in sedentary controls and athletes. We included 13 sedentary controls and 20 endurance athletes to undergo cardiovascular magnetic resonance (CMR) imaging at rest and during moderate and vigorous exercise using a CMR-compatible ergometer. AVAD was calculated as the largest ventricular short-axis area minus the largest atrial short-axis area in end-diastole (ED) and end-systole (ES) as measured from CMR short-axis images. AVAD in ED increased during moderate exercise in both sedentary controls and athletes, thus aiding diastolic filling, but did not increase further during vigorous exercise. AVAD in ES was negative in both groups at rest and decreased further with increasing exercise intensity in sedentary controls, whereas athletes remained unchanged. In conclusion, results from AVAD in ED indicate the net hydraulic force to further augment diastolic filling during moderate exercise when compared to rest, providing new insights into the mechanism by which diastolic function increases during exercise.