INTRODUCTION:
Helicobacter pylori-
infected individuals may present low-density infection, undetectable by conventional tests such as histology, rapid urease test, or urea breath test. Droplet digital polymerase chain reaction (ddPCR) is more sensitive than other polymerase chain reaction methods. We aimed to evaluate the ability of ddPCR to detect
H. pylori
infection in patients diagnosed as negative by conventional tests.
METHODS:
Dyspeptic patients (n = 236) were tested for
H. pylori
by histology, urea breath test, and rapid urease test. Patients were classified as having 3 positive (n = 25, control group), 2 positive (n = 12), one positive (n = 41), or zero positive (n = 158) diagnostic tests. DNA was extracted from gastric biopsies. Triplicate ddPCR testing for each of the 16S rDNA, ureA, and vacA(s) genes was performed using a QX200 ddPCR system (Bio-Rad). A gene was considered positive when detected by at least 2 of 3 repeated ddPCRs.
H. pylori
positivity was defined as having 2 or more positive genes.
RESULTS:
All the biopsies of the control patients were positive for all 3 16S rDNA, ureA, and vacA(s) genes.
H. pylori
infection was detected in 57 (36%), 22 (54%), and 9 (75%) patients with zero, 1, and 2 positive diagnostic tests, respectively. The density of infection was 5, 121, 599, and 3,133 copies of
H. pylori
genome equivalents for patients with zero, 1, and 2 of 3 positive test results and for the control group, respectively.
DISCUSSION:
ddPCR detected low-density “occult”
H. pylori
infection in a significant proportion (36%) of patients diagnosed as negative by conventional methods. The number of conventional positive tests was related to the density of infection.