Key Points• Sipa1 loss leads to BM niche alterations prior to the initiation of MPN.• Sipa1-deficient BM niche induces lethal MPN from normal hematopoietic cells.Mutations of signal-induced proliferation-associated gene 1 (SIPA1), a RAP1 GTPaseactivating protein, were reported in patients with juvenile myelomonocytic leukemia, a childhood myelodysplastic/myeloproliferative neoplasm (MDS/MPN). Sipa1 deficiency in mice leads to the development of age-dependent MPN. However, Sipa1 expression in bone marrow (BM) microenvironment and its effect on the pathogenesis of MPN remain unclear.We here report that Sipa1 is expressed in human and mouse BM stromal cells and downregulated in these cells from patients with MPN or MDS/MPN at diagnosis. By using the