Upper tract urothelial carcinoma (UTUC) has specific high prevalence in Asian population and, compared to bladder cancer, there are unique etiologic and genomic factors contributing to its tumorigenesis. Although up-regulation of sodium-coupled neutral amino acid transporter 1 (SLC38A1) gene has been previously implicated as a promising therapeutic target for many tumors, the role of SLC38A1 in UTUC tumorigenesis, however, remains unknown. This study measured the expression levels of SLC38A1 protein in human renal pelvis carcinoma tissues and evaluated the effect of SLC38A1 gene silencing on behaviors of two UTUC cell lines, BFTC-909 and UM-UC-14. Immunohistochemical observation indicated that SLC38A1 was significantly up-regulated in UTUC lesion tissues compared to adjacent normal tissues. Using siRNA-mediated gene silencing approach, knockdown of SLC38A1 protein clearly showed inhibitory effects on proliferation and migration of UTUC cells. In addition, the SLC38A1 siRNA delivery significantly The SLC38A1 siRNA delivery effectively ameliorated the constitutive phosphorylation levels of Akt and mTOR, and simultaneously suppressed the expression of NF-κB and MMP-9 in the UTUC cells. In conclusion, our findings demonstrated that SLC38A1 may serve as a diagnostic and prognostic biomarkers in UTUC, and strongly suggested that SLC38A1 silencing is a novel therapeutic strategy for UTUC treatment.