When the common soil bacterium Bacillus subtilis is starved or exposed to any of a range of stresses, a complex signal transduction network is activated. This then leads to activation of the alternative RNA polymerase subunit B , which controls a stress response regulon composed of more than 150 genes (19,44,55), of which the ctc gene has generally been accepted as the prototype representative (19). The genes from this B regulon encode proteins from several different functional categories, including transcriptional regulation, cell protection (like carotenoid biosynthesis and the expression of catalase activity), influx and efflux processes, and carbon metabolism (20). The B response can be activated by two separate, but converging, branches of a very complex signal transduction network. These two branches are responsive to different stress signals, as follows: the energy stress branch (elicited by carbon, oxygen, or phosphate limitation) leads to the activation of RsbP, whereas the environmental stress branch (elicited by addition of, e.g., salt or ethanol) activates RsbU. Both RsbP and RsbU are specific phosphatases of the phosphorylated form of RsbV (phosphorylated on a serine residue), which indirectly leads to activation of B (for reviews, see references 19, 32, and 55). Signaling through the environmental branch involves a large, complex structure, called the stressosome (14, 31), for sensory input. This structure is larger than 1.5 MDa and contains the RsbS, RsbT, and RsbRA proteins and several paralogues of RsbRA (14,26). Activation of the stressosome leads to RsbT release, which in turn activates RsbU (15).It has been reported that the B response in B. subtilis can be activated with blue light via involvement of the phototropin homologue YtvA (4,17,49). This protein contains a single LOV (light oxygen voltage) domain (21) that binds a flavin cofactor and shows an authentic photocycle with a very slow thermal recovery rate of its stable ground state (28). It functions in the environmental stress branch of the upstream signal transduction network that regulates activation of B . It is one of the paralogues of RsbRA, but so far, no evidence has been provided to show that YtvA forms an (integral) part of the stressosome. In this study we show that B can also be activated with light through the energy stress branch of this cascade, via the RsbP protein. This second light response is preferentially activated by red light. Significantly, transcriptome analyses confirm that YtvA-dependent and -independent light effects upregulate the B regulon.
MATERIALS AND METHODSBacterial strains and genetic manipulation. The bacterial strains, plasmids, and primers used in this investigation are listed in Table 1. DNA manipulations and molecular genetic techniques were carried out using standard procedures. The strains PB565 (2), PB567 (57), and PB605 (11) were provided by C. Price (University of California at Davis) and were constructed using previously published procedures (Table 1). Escherichia coli MC1061 was used as th...