We show that the effects of applied magnetic fields on radical pair reactions can be sensitively measured from sample volumes as low as ~100 femtolitres using total internal reflection fluorescence microscopy. Development of a fluorescence-based microscope method is likely to be a key step in further miniaturisation that will allow detection of magnetic field effects on single molecules.Flavins -tricyclic aza-aromatic compounds -occur widely in Nature and perform a variety of biological functions, many of which involve electron transfer. 1 Attention has recently focussed on the flavoprotein cryptochrome which has been proposed as the primary sensory molecule by which migratory birds detect the direction of the Earth's magnetic field. 2-5 Blue-light excitation of the flavin adenine dinucleotide (FAD) chromophore in cryptochrome is thought to trigger intra-protein electron transfers along a triad of tryptophan (Trp) residues to give a stabilised, charge-separated FAD-Trp radical pair. 6-9 Transient absorption studies 10 have shown that coherent interconversion of the electronic singlet and triplet states of the radical pair gives rise to long lived states of the protein whose quantum yields can be modified by applied magnetic fields via the well-established radical pair mechanism. 11,12 Studies of the magnetic sensitivity of cryptochromes are currently constrained by the relatively high protein concentrations and large sample volumes required for absorption-based spectroscopy and by the photo-degradation caused by the intense laser pulses often needed for such measurements. 13,14 Cryptochromes -in particular the vertebrate proteins -are difficult to express recombinantly in large quantities and tend to aggregate in concentrated solution. Further in vitro studies of their magnetic responses will require a detection method compatible with much smaller quantities of protein, the obvious choice being fluorescence.Fluorescence has been used extensively to monitor magnetic field effects (MFEs) on the photochemistry of small organic radicals. In appropriate, usually non-aqueous, solvents singlet but not triplet radical pairs can often recombine to form an exciplex whose fluorescence provides a convenient and sensitive probe of the magnetic response. [15][16][17][18] Effective though such an approach has proved, it is manifestly inapplicable when the radical pair cannot recombine to form a luminescent state. Many radical pairs, including flavin-Trp, do not form excited molecular complexes and cryptochromes have no other electronically excited states that can be populated from the FAD-Trp radical pair.However, flavins do have fluorescent excited states that can be exploited as MFE probes. For cyclic photochemical reactions under conditions of continuous illumination, the fluorescence intensity reflects the steady state concentration of ground state flavin, which in turn depends on the concentrations of long-lived radical intermediates in the photocycle. If all other species are short lived and thus present in low concentra...