Aims: Glycogen (GL) and lipids (LP) are efficient biofuel substrates, whereas polyhydroxybutyrate (PHB) is a potent biodegradable plastic. This study aimed to increase accumulation of these three compounds in Synechocystis sp. PCC 6803. Methods and Results: Under autophototrophic growth, co-accumulation of the three compounds reached maximum level in a mid-stationary phase at 39Á2% of dry weight (22Á7% GL, 14Á1% LP and 2Á4% PHB). Nitrogen deprivation increased this to 61Á5% (36Á8% GL, 11Á2% LP and 13Á5% PHB), higher than that achieved by phosphorus, sulfur, iron or calcium deprivation. Combining nitrogen deprivation with 0Á4% (w/v) glucose addition for heterophototrophic growth and optimizing the light intensity (200 lmol photons m À2 s À1 )synergistically enhanced combined accumulation to 71Á1% of biomass (41Á3% GL, 16Á7% LP and 13Á1% PHB), a higher level than previously reported in Synechocystis. However, the maximum coproductivity of GL, LP and PHB (at 0Á72 g l À1 ) was obtained in the 12-day heterophototrophic culture without nitrogen deprivation. Conclusion: Accumulation of GL, LP and PHB was enhanced under both autophototrophic and heterophototrophic conditions by optimizations of nutrient and light supplies. Significance and Impact of the Study: This study provides a means for increasing co-production of potent bioenergy substrates and useful biomaterials in Synechocystis which may also be applicable to other cyanobacteria.