Mycobacterium species, including the human pathogen Mycobacterium tuberculosis, are unique among Gram-positive bacteria in producing a complex cell wall that contains unusual lipids and functions as a permeability barrier. Lipids in the cell wall were hypothesized to form a bilayer or outer membrane that would prevent the entry of chemotherapeutic agents, but this could not be tested because of the difficulty in extracting only the cell-wall lipids. We used reverse micellar extraction to achieve this goal and carried out a quantitative analysis of both the cell wall and the inner membrane lipids of Mycobacterium smegmatis. We found that the outer leaflet of the outer membrane contains a similar number of hydrocarbon chains as the inner leaflet composed of mycolic acids covalently linked to cell-wall arabinogalactan, thus validating the outer membrane model. Furthermore, we found that preliminary extraction with reverse micelles permitted the subsequent complete extraction of inner membrane lipids with chloroform-methanol-water, revealing that one-half of hydrocarbon chains in this membrane are contributed by an unusual lipid, diacyl phosphatidylinositol dimannoside. The inner leaflet of this membrane likely is composed nearly entirely of this lipid. Because it contains four fatty acyl chains within a single molecule, it may produce a bilayer environment of unusually low fluidity and may slow the influx of drugs, contributing to the general drug resistance phenotype of mycobacteria.Mycobacterium smegmatis | mycolic acid | phosphoinositides I t is now generally accepted that the organisms belonging to the Corynebacteria-Mycobacteria-Nocardia group are covered by a complex cell envelope containing the inner plasma membrane (IM), the peptidoglycan-arabinogalactan complex, and the outer membrane (OM) that is covalently linked to the arabinogalactan (1, 2). However, it has been nearly impossible to isolate the OM without contamination from IM components, and this makes the previous published studies on OM composition (3) and the models of OM (4, 5) less than convincing.The major limitation here has been the lack of a reliable technique capable of separating the IM and OM of mycobacteria. Although methods such as shaking with glass beads have been used in the past (3), these are random mechanical methods and an absolute selectivity cannot be achieved. Recently we used the technique of reverse micellar solution (RMS) extraction for Corynebacterium glutamicum cells and found that complete and selective removal of lipids from the OM was possible (6). Through the quantification of lipids we proved that a member of the Corynebacterineae had enough fatty acid chains beyond the peptidoglycan to form a complete OM bilayer barrier around the cell. In the process, we could assign the location of different lipid species to the OM and IM of the corynebacterial envelope. We now extend this approach to Mycobacterium smegmatis, which is commonly used as a model species of mycobacteria, a group including Mycobacterium tuberculosis tha...