There are at least five lipoxygenases (TomloxA, TomloxB, TomloxC, TomloxD, and TomloxE) present in tomato (Lycopersicon esculentum Mill.) fruit, but their role in generation of fruit flavor volatiles has been unclear. To assess the physiological role of TomloxC in the generation of volatile C6 aldehyde and alcohol flavor compounds, we produced transgenic tomato plants with greatly reduced TomloxC using sense and antisense constructs under control of the cauliflower mosaic virus 35S promoter. The expression level of the TomloxC mRNA in some transgenic plants was selectively reduced by gene silencing or antisense inhibition to between 1% and 5% of the wild-type controls, but the expression levels of mRNAs for the four other isoforms were unaffected. The specific depletion of TomloxC in transgenic tomatoes led to a marked reduction in the levels of known flavor volatiles, including hexanal, hexenal, and hexenol, to as little as 1.5% of those of wild-type controls following maceration of ripening fruit. Addition of linoleic or linolenic acid to fruit homogenates significantly increased the levels of flavor volatiles, but the increase with the TomloxC-depleted transgenic fruit extracts was much lower than with the wild-type control. Confocal imaging of tobacco (Nicotiana tabacum) leaf cells expressing a TomloxC-GFP fusion confirmed a chloroplast localization of the protein. Together, these results suggest that TomloxC is a chloroplast-targeted lipoxygenase isoform that can use both linoleic and linolenic acids as substrates to generate volatile C6 flavor compounds. The roles of the other lipoxygenase isoforms are discussed.Lipoxygenases (LOX; EC1.13.11.12) are nonheme iron-containing dioxygenases that catalyze the incorporation of molecular oxygen into polyunsaturated fatty acids containing a cis, cis-1.4-pentadiene moiety, such as linoleic and linolenic acids, converting them into fatty acid hydroperoxides (HPOs). Multiple isoforms of LOX have been detected in a wide range of plants, animals, and microorganisms (Zimmerman and Vick, 1973;Eskin et al., 1977;Shechter and Grossman, 1983;Hamberg, 1986;Samuelsson et al., 1987;Vick and Zimmerman, 1987). The LOX isoforms are distinguished by differences in reaction pH optimum, pI, substrate and product specificity, tissue-specific or subcellular localization, and synthesis at particular developmental stages (Axelrod, 1974;Bild et al., 1977;Axelrod et al., 1981;Ferrie et al., 1994;Royo et al., 1996;Heitz et al., 1997).In animals, it is well established that HPOs are the primary metabolites of the pathways that lead to the formation of important regulatory molecules in inflammatory responses such as leukotrienes and lipoxins (Yamamoto, 1991). In higher plants, on the other hand, the physiological role of HPOs generated by individual LOX isoforms is still uncertain. It has been postulated that plant lipoxygenases may be involved in plant growth and development; biosynthesis of regulatory molecules, such as jasmonic acid (JA) and traumatin; biosynthesis of volatile compounds, s...