Melanin-concentrating hormone (MCH)1 is a cyclic peptide, first isolated from salmon pituitary glands on the basis of its skin paling property (1), then purified from rat hypothalami, and sequenced (2). Synthesis of MCH was localized almost exclusively in a large population of neurons present in the zona incerta and lateral hypothalamus area of the mammalian brain (3-5). The MCH axonal network projected widely throughout the brain and posterior pituitary but innervated poorly the external part of the median eminence in resting animals (5). This particular cellular and axonal distribution argued in favor of a neurotransmitter/neuromodulator role for MCH in a large spectrum of functions in the central nervous system (reviewed in Refs. 6 and 7). Recently, several laboratories have demonstrated changes in different behaviors following intracerebroventricular injection of MCH in the rat brain. In particular, MCH plays a particularly important role in the regulation of feeding behavior and associated pathologies such as obesity (8 -11). Given the important biological functions of MCH, it is of great interest to define the mechanisms that regulate the expression of its cognate gene. A single MCH-encoding gene has been identified in both rat and mouse (12, 13), and two distinct MCH gene systems have been found in primates (14, 15). The regulation of MCH gene expression has been most extensively investigated with in vivo models (reviewed in Ref. 7). However, we established recently that production of mature MCH mRNA (0.95 kb in length) can be induced in PC12 cells following treatment with nerve growth factor (NGF) and lithium (16,17). Interestingly, we identified MCH RNA species of high molecular weight (1.4, 3.5, and 4.0 kb in length) in unstimulated PC12 cells; those transcripts transiently disappearing after a short term treatment with NGF and lithium. Because the increase in MCH mRNA content was not apparently associated with transcriptional activation, we hypothesized that some of the large MCH gene-related transcripts could be involved in the regulation of the processing or degradation of the MCH mRNA (16,17).In the present study, we described the isolation and characterization of the high molecular weight MCH RNAs in PC12 cells and in rat tissues. Interestingly, they are derived from a new gene located on the opposite DNA strand to the MCH gene, with extensive overlap existing between the 3Ј end of this gene and the MCH transcriptional unit. Some of the antisense MCH RNAs display alternative splicing and encode new DNA/RNAbinding proteins, whereas other putative transcripts lack extensive open reading frames suggesting different functions for the two classes of antisense MCH RNAs.