The stratigraphic distribution of the different faunal groups of the upper Cenomanian–lower Turonian deposits in the north Eastern Desert, Egypt, is investigated. Variations in species richness, faunal diversity, extinction and origination rates before, during, and after the globally known Oceanic Anoxic Event (OAE) 2 are documented. The OAE2 interval is constrained by the first occurrence of the marker ammonite species Vascoceras cauvini and the last occurrence of Vascoceras proprium, along with the positive δ13C excursions, previously identified from the Wadi El-Burga section. A prominent decline in species richness and diversity, high extinction rates, and low origination rates of the recorded macrofaunal elements are reported during the OAE2 interval. Such faunal bottleneck was attributed to the prevailing major palaeoclimatic and palaeoenvironmental perturbations during that time. Besides oceanic anoxia, changes in sea water palaeotemperature and sea level are discussed. It can be concluded that oceanic anoxia, warming, and /or transgressive episodes were the major driving mechanisms of the faunal crisis reported in the present work.