Abstract. Situated at the southern edge of the proto-North Sea the lower Eocene Schöningen Formation of the Helmstedt Lignite Mining District, Lower Saxony, Germany is characterized by several lignite seams alternating with estuarine to brackish interbeds. Here, we present carbon isotope data of bulk organic matter (δ13CTOC), organic carbon content (%TOC), and palynomorphs from a 98 m thick sequence of the Schöningen Formation embedded into a new robust age model. This is based on eustatic sea-level changes, biostratigraphy, and a correlation to existing radiometric ages. Based on the δ13CTOC data we observe six negative carbon isotope excursions (CIEs) reflecting massive short-term carbon cycle perturbations. A strong CIE of −2.6 ‰ in δ13CTOC values in the Main Seam and the succeeding marine interbed can be related to the Paleocene–Eocene Thermal Maximum (PETM). The subsequent CIE of −1.7 ‰ in δ13CTOC values may be correlated with the Eocene Thermal Maximum 2 (ETM2) or slightly older events preceding the ETM2. High-amplitude climate fluctuations including at least 4 minor CIEs with a maximum negative shift of −1.3 ‰ in δ13CTOC in the upper part of the studied section are characteristic for the EECO. Palynological analysis across the Main Seam proved that shifts in δ13CTOC values are correlated with changes in the peat forming wetland vegetation, specifically the change from a mixed angiosperm and gymnosperm flora to an angiosperm dominated vegetation at the onset of the PETM. The PETM-related CIE shows a distinct rebound to higher δ13CTOC values shortly after the onset of the CIE, which is here recognized as a common feature of terrestrial and marginal marine PETM-records worldwide and may be related to changes in the vegetation including different carbon isotope budgets of gymnosperms and angiosperms.