Liver transplantation (LT) of hepatitis C virus (HCV)-infected grafts into HCV-infected recipients leads to superinfection with two different virus strains. To characterize the virological outcomes of HCV superinfection immediately after LT, we performed phylogenetic analysis of a fragment of the NS5B gene in donor and recipient serum samples prospectively collected before and after LT, starting on day 1. In four of six cases, the donor strain finally prevailed, while in the remaining two cases, the native recipient strain overtook the donor quasispecies. Clonal sequence analysis showed that, in three cases, the expelled strain was undetectable 1 day after LT. Our study shows that superinfection with a different HCV strain can lead to the exclusion of one strain by the other as soon as the first day after LT. This would suggest that competition might not be limited to the replication level, but could also take place during virus entry.Hepatitis C virus (HCV) infects an estimated 170 million individuals worldwide, with approximately 3 million individuals newly infected each year (Lavanchy, 2009). HCV displays a high rate of genetic variability and has been classified into six major genotypes (genotypes 1-6) and numerous subtypes (Kuiken & Simmonds, 2009). In addition, in a single infected individual, HCV circulates as a complex population of closely related genomes referred to as quasispecies (Forns et al., 1999; Martell et al., 1992).Chronic infection develops in 50-80 % of infected individuals; HCV chronic carriers are at increased risk of developing cirrhosis and hepatocellular carcinoma. Thus, HCV is the leading indication of liver transplantation (LT) in the Western world and Japan. Regrettably, the demand for liver transplants exceeds the organ supply. One approach to expand the pool of organs for transplantation is to use grafts from extended-criteria donors, such as HCV-positive donors. Several studies have reported no differences in outcomes with the use of HCV-positive grafts in comparison with the use of non-infected grafts (Marroquin et al., 2001;Vargas et al., 1999;Velidedeoglu et al., 2004), although donor age has recently been recognized to play an important role after transplantation with HCV-positive grafts (Khapra et al., 2006). In addition, it is important to note that grafts from genotype 1 donors should not be allocated to recipients infected with genotypes 2 or 3, in which antiviral therapy is significantly more effective than for genotype 1, and the introduction of the latter genotype may be detrimental for the patient's outcome.HCV superinfection refers to infection with a different HCV strain in an individual already infected with HCV. This phenomenon has been reported in experimentally infected chimpanzees (Farci et al., 1992; Okamoto et al., 1994; Prince et al., 1992) and in individuals at a very high risk for infection, such as intravenous drug users, haemophiliacs or patients on haemodialysis, and multitransfused patients before the screening of HCV in the blood donor population (Ey...