Hydrogen-like
bonding between halogen and hydrogen atoms is widely
accepted as the driving force in self-ordering process of various
molecular layers. A proper understanding of how the molecular periphery
influences the self-ordering is crucial for formation of structurally
and electronically well-defined interfaces. To probe the stability
of ordered molecular layers of phthalocyanines with various fluorination
on the Si(111)-Tl 1 × 1 surface we introduce utilization of a
strong electric field of the tip of the scanning tunneling microscope.
Ab-initio calculations on extended lattices are used to distinguish
molecule–substrate and intermolecular interactions. A systematic
comparison of combinations of phthalocyanines with various fluorination
provides an understanding of how the molecular periphery influences
the intermolecular interaction. We demonstrate that the straightforward
explanation of the process of self-ordering by hydrogen-like bonding
is not acceptable in the studied case.