E-commerce is the most essential application for conducting business transactions. Delivering product information to customers require an essential machine called recommender system. Recommender systems have been adopted in many large e-commerce companies such as Amazon, e-Bay, Alibaba, YouTube, iTunes, and so on. Ratings have become an essential factor to calculate product information. They are users' expressions about their satisfaction regarding a product or service. Unfortunately, the number of ratings is extremely sparse. Generating rating prediction is a major issue in the recommender system research field. The most popular model using latent factor or matrix factorization to generate rating prediction faced the problem in accuracy performance. This research aimed to develop a novel model to generate rating prediction using two deep learning variants based on Stack Denoising Auto Encoder (SDAE), Long Short Term Memory (LSTM), and combining with a latent factor model based on Probabilistic Matrix Factorization (PMF). This study considered integrated information resources, including user information and document product information. Following the experiment report involved in Movielens and Amazon Information Video dataset, our model outperformed previous works using PMF, Collaborative Deep Learning (CDL), Probabilistic Hybrid Deep Learning (PHD) and LSTM-PMF model, with more than 5% in average using Root Mean Square Error (RMSE) evaluation metrices.