The
second helix in lipoxygenases adapts to permit substrate access
to the active site, but details of this process are varied and poorly
understood. We therefore examined the dynamics of helix 2 in solutions
of spin-labeled soybean lipoxygenase-1 and spin relaxation at 60 K
of the spin-labels by catalytic iron. Helix 2 in soybean lipoxygenase
structures is surface-exposed and contains one turn of π-helix,
centrally located. A site-directed spin-label scan of 18 of the 21
helix 2 residues, and electron paramagnetic resonance, showed that
the π-helical segment became unusually mobile, on a nanosecond
time scale, under conditions favoring substrate binding (pH 9 and
lipid addition), while segments before and after had relatively unchanged
dynamics. Backbone dynamics of residues in the π-helical segment
appeared to be correlated, at pH 9. Samples also were frozen to examine
the polarity and proticity of the local environments, the effect of
the local environment on intrinsic relaxation, and dipolar relaxation
by two symmetries of catalytic iron. The average hyperfine tensor
component, Azz, of four
π-helix residues decreased by 1.75 G, with an increase in pH
from 7 to 9, while it remained unaffected for nearby buried residues.
Power saturation data suggested the change in polarity specific to
the π-helix altered the intrinsic relaxation rates. Different
symmetries of iron contributed to distance-dependent magnetic relaxation.
We interpret these data to mean that a π-helix in the second
helix of plant lipoxygenases is highly dynamic and is the site where
lipid chains penetrate to inner helices that outline the substrate
pocket.