2024
DOI: 10.3389/fpls.2024.1328966
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LocoGSE, a sequence-based genome size estimator for plants

Pierre Guenzi-Tiberi,
Benjamin Istace,
Inger Greve Alsos
et al.

Abstract: Extensive research has focused on exploring the range of genome sizes in eukaryotes, with a particular emphasis on land plants, where significant variability has been observed. Accurate estimation of genome size is essential for various research purposes, but existing sequence-based methods have limitations, particularly for low-coverage datasets. In this study, we introduce LocoGSE, a novel genome size estimator designed specifically for low-coverage datasets generated by genome skimming approaches. LocoGSE r… Show more

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