Long Non-Coding RNA Derived from lncRNA–mRNA Co-Expression Networks Modulates the Locust Phase Change

Li, Ting; Chen, Bing; Yang, Pengcheng; Wang, Depin; Du, Beining; Kang, Le

doi:10.1016/j.gpb.2020.05.001

Cited by 15 publications

(11 citation statements)

References 52 publications

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“…The number of transcripts ( Figure 4 B). Most lncRNAs contained 2 or 3 exons, whereas most mRNAs had more than 10 exons ( Figure 4 C), in line with previous results ( Li et al, 2020 ). A total of 7,400 lncRNAs were co-expressed in the high and low sperm viability groups; of these, 227 and 202 were specifically expressed in the low sperm viability and high sperm viability groups, respectively ( Figure 4 D).…”

Section: Resultssupporting

confidence: 93%

Transcriptome analysis of the testes of male chickens with high and low sperm motility

Li²,

Liu³

et al. 2022

Poultry Science

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Section: Resultssupporting

confidence: 93%

Transcriptome analysis of the testes of male chickens with high and low sperm motility

Li²,

Liu³

et al. 2022

Poultry Science

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“…lncRNAs have been identified in Sogatella frucifera [8], Tribolium castaneum [9], Drosophila melanogaster [13], Locusta migratoria [14], Apis cerana [15], Plutella xylostella [16], and Bombyx mori [17]. The functional annotation of lncRNAs in insect species has revealed that they can regulate immunity, behavioral plasticity, development, fecundity, and resistance [18][19][20][21][22].…”

Section: Introductionmentioning

confidence: 99%

Genome-Wide Characterization and Identification of Long Non-Coding RNAs during the Molting Process of a Spider Mite, Panonychus citri

Liu

Smagghe

et al. 2021

IJMS

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Molting is essential for arthropods to grow. As one of the important arthropod pests in agriculture, key spider mite species (Tetranychus and Panonychus) can normally molt three times from the larva to adult stage within a week. This physiological strategy results in the short lifecycle of spider mites and difficulties in their control in the field. Long non-coding RNAs (lncRNAs) regulate transcriptional editing, cellular function, and biological processes. Thus, analysis of the lncRNAs in the spider mite molting process may provide new insights into their roles in the molting mechanism. For this purpose, we used high-throughput RNA-seq to examine the expression dynamics of lncRNAs and mRNAs in the molting process of different development stages in Panonychus citri. We identified 9199 lncRNAs from 18 transcriptomes. Analysis of the lncRNAs suggested that they were shorter and had fewer exons and transcripts than mRNAs. Among these, 356 lncRNAs were differentially expressed during three molting processes: late larva to early protonymph, late protonymph to early deutonymph, and late deutonymph to early adult. A time series profile analysis of differentially expressed lncRNAs showed that 77 lncRNAs were clustered into two dynamic expression profiles (Pattern a and Pattern c), implying that lncRNAs were involved in the molting process of spider mites. Furthermore, the lncRNA–mRNA co-expression networks showed that several differentially expressed hub lncRNAs were predicted to be functionally associated with typical molting-related proteins, such as cuticle protein and chitin biosynthesis. These data reveal the potential regulatory function of lncRNAs in the molting process and provide datasets for further analysis of lncRNAs and mRNAs in spider mites.

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“…In conclusion, the migratory locust can be used as an animal model to study the mechanisms underlying anesthesia and post-anesthesia recovery. With accumulation of genomic and transcriptomic data ( Wei et al, 2009 ; Wang et al, 2014 ; Yang et al, 2019 ; Li et al, 2020 ), we could therefore study gene expression regulation underlying anesthesia gene expression, anesthetic potency and recovery time induced by isoflurane and sevoflurane exposures. The JAK signaling induced by sevoflurane anesthesia may protect the locust brain from being damaged by anesthetic neurotoxicity, and this protection may shorten the duration of recovery from sevoflurane anesthesia.…”

Section: Discussionmentioning

confidence: 99%

Janus Kinase Mediates Faster Recovery From Sevoflurane Anesthesia Than Isoflurane Anesthesia in the Migratory Locusts

Zheng

et al. 2022

Front. Physiol.

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Inhalation anesthetics isoflurane and sevoflurane have been widely used in clinical practice for anesthesia. However, the molecular mechanisms underlying the faster recovery from sevoflurane anesthesia than isoflurane anesthesia remain largely undetermined. Herein, we use RNA-seq, RNA interference, quantitative real-time PCR and western blotting to explore the mechanisms of recovery from isoflurane and sevoflurane anesthesia in the migratory locusts. Although the migratory locusts show similar anesthetic responses to these two chemicals in corresponding half-maximal effective concentrations (EC50s), the recovery from sevoflurane anesthesia is significantly faster than that for isoflurane anesthesia after 30 min of anesthetic exposure. Transcriptome analysis shows that those transcripts involved in cytoskeletal components, Janus kinase (JAK) pathway and cuticle protein are differentially expressed in locust brains in response to isoflurane and sevoflurane. RNAi knockdown confirms that Actin, Myosin-like protein 84B (Mlp84B), JAK and cuticle protein NCP56 do not affect anesthetic response of the locusts to these two chemical anesthetics. Moreover, actin, Mlp84B and NCP56 do not affect differential recovery from isoflurane and sevoflurane anesthesia, whereas RNAi knockdown of JAK and its partner STAT5B does not affect anesthetic recovery from isoflurane but elongates recovery duration from sevoflurane anesthesia. Thus, JAK may mediate faster recovery from sevoflurane anesthesia than from isoflurane anesthesia in the migratory locust. This finding provides novel insights into the molecular mechanism underlying faster recovery from sevoflurane anesthesia than isoflurane anesthesia.

show abstract

Long Non-Coding RNA Derived from lncRNA–mRNA Co-Expression Networks Modulates the Locust Phase Change

Cited by 15 publications

References 52 publications

Transcriptome analysis of the testes of male chickens with high and low sperm motility

Transcriptome analysis of the testes of male chickens with high and low sperm motility

Genome-Wide Characterization and Identification of Long Non-Coding RNAs during the Molting Process of a Spider Mite, Panonychus citri

Janus Kinase Mediates Faster Recovery From Sevoflurane Anesthesia Than Isoflurane Anesthesia in the Migratory Locusts

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