Long-Range Electrostatic Interactions Significantly Modulate the Affinity of Dynein for Microtubules

Abstract

The dynein family of microtubule minus-end directed motor proteins drives diverse functions in eukaryotic cells, including cell division, intracellular transport, and flagellar beating. Motor protein processivity, which characterizes how far a motor walks before detaching from its filament, depends on the interaction between its microtubule-binding domain (MTBD) and the microtubule. Dynein’s MTBD switches between high- and low-binding affinity states as it steps. Significant structural and functional data show that specific salt bridges within the MTBD and between the MTBD and the microtubule govern these affinity state shifts. However, recent computational work suggests that non-specific, long-range electrostatic interactions between the MTBD and the microtubule may also play a significant role in the processivity of dynein. To investigate this hypothesis, we mutated negatively charged amino acids remote from the dynein MTBD-microtubule-binding interface to neutral residues and measured the binding affinity using microscale thermophoresis and optical tweezers. We found a significant increase in the binding affinity of the mutated MTBDs for microtubules. Furthermore, we found that charge screening by free ions in solution differentially affected the binding and unbinding rates of MTBDs to microtubules. Together, these results demonstrate a significant role for long-range electrostatic interactions in regulating dynein-microtubule affinity. Moreover, these results provide insight into the principles that potentially underlie the biophysical differences between molecular motors with various processivities and protein-protein interactions more generally.Statement of SignificanceThe dynein family of motor proteins drives the motility of multiple cellular functions by walking toward the minus end of microtubules. The biophysical mechanisms of dynein rely on its ability to change affinity for the microtubule as it steps. Specific short-range electrostatic interactions acting at the microtubule-binding domain (MTBD)-microtubule interface are known to govern binding affinity. This study shows that non-specific longer-range electrostatic interactions due to charged amino acids remote from the binding interface also contribute significantly to the binding affinity mechanisms. Our results suggest that subtle differences in the electrostatic charge distribution within the MTBD significantly affect the molecular biophysical motility mechanisms in the dynein family of motors.