<b><i>Introduction:</i></b> Hidradenitis suppurativa (HS) is a chronic inflammatory disease characterized by recurrent nodules, abscesses, and sinus tracts, resulting in scarring. Patients suffer significantly impacted quality of life (QoL), manifested by anxiety and depression. We describe microbial isolates identified from active sites in adults with HS, and explore associations between organisms isolated, disease severity, and QoL. <b><i>Methods:</i></b> Observational study over 2 years. Assessment was made of disease severity using the Hurley staging score and of QoL scores, and subjective assessment. Wound swab samples were obtained from sites of active disease. Descriptive summary statistics and tests of significance were used to analyse the data. <b><i>Results:</i></b> Two hundred and twelve patients participated, resulting in 352 episodes, and 501 lesion swab samples. 54% were female and 59% were obese, median age of 37 years. A lower proportion of Gram-negative organisms and more staphylococcal and streptococcal organisms were isolated from sites of disease in individuals with stage 3 disease compared to those with stage 1–2 disease (<i>p</i> = 0.001). We found no association between microbial isolation and QoL. <b><i>Discussion/Conclusions:</i></b> Hurley stage 3 disease is associated with more infected lesions than Hurley stage 1–2 disease, but the QoL experienced by patients with HS is determined by factors other than infection.