Oxygen depletion in deep-water layers of lakes is of growing concern as it expands due to eutrophication and climate change. Anoxia is dangerous for benthic invertebrates and fishes, enables the production of potent greenhouse gases and releases stored phosphorus from sediments, among others. However, quantitatively forecasting the consequences of anoxia remains a challenge. Here, we developed a novel tool, anaerobic duration, which may be derived from oxygen profiles to predict end-ofsummer concentration of various water chemical parameters. We argue that all by-products of anaerobic microbial metabolism should be relatable to anaerobic duration as they are released or processed continuously during anoxia. We show that anaerobic duration can be used to predict the ecological consequences of temporally and spatially growing anoxia in lakes of varying nutrient availability and condition.