T DP-43 belongs to the family of heterogeneous nuclear ribonucleoproteins (hnRNPs) and binds single-stranded RNA via its N-terminal RNA recognition motif (1). Members of the hnRNP family serve multiple roles in the generation and processing of RNA, including transcription, splicing, transport, and stability. TDP-43 inhibits exon recognition during splicing upon recruitment to the 3Ј splice site of the cystic fibrosis transmembrane conductance regulator (CFTR) and apolipoprotein AII transcripts via a sequence of GU repeats (2-5). The binding affinity of the recombinant human, worm, and fly homologues for this target sequence is remarkably high, measured in the low nanomolar range (6). TDP-43 also has been implicated in the transcription regulation of HIV and the spermatid-specific gene SP-10 through promoter association (7,8). More recently, TDP-43 was identified as the main ubiquitinated component of cytoplasmic inclusions in neurodegenerative diseases, specifically frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS) (9, 10). Abnormal aggregation of TDP-43 in the cytoplasm now is thought to define a class of frontotemporal dementias termed TDP-43 proteinopathies. Mislocalization and the consequent loss of TDP-43 function in neuronal cells may represent a common event in FTLD pathogenesis. Despite the increasing awareness of processes involving TDP-43, the cellular role of the protein still is poorly defined.We depleted TDP-43 by RNA interference (RNAi) to identify TDP-43-regulated transcripts. Our results point to cyclindependent kinase 6 (Cdk6) as a unique target of TDP-43 regulation and suggest that TDP-43 inhibits Cdk6 expression through recruitment to the GU-rich transcript. Simultaneously, we found that TDP-43 silencing alters cell cycle distribution and induces apoptosis. Table 1 lists 16 of these proteins whose functions have been associated with retinoblastoma protein (pRb) activity. The tumor suppressor pRb is essential for the control of cell cycle progression, cellular differentiation, and maintenance of genome integrity. Inactivation of pRb occurs through its gradual phosphorylation by Cdks during the G 1 phase of the cell division cycle resulting in the activation of transcription factors that promote cell proliferation and enable transition on to the S phase (see ref. 11 for review). Our RNA microarray analyses showed altered levels of transcripts coding for proteins whose functions are related to the control of cell cycle progression (Cdk6, POLD4, cyclin B1, Cdk2, UBE2C, and SKP2). In addition, some of these factors are known to either directly interact with pRb (e.g., HDAC1, RBBP4, and CRI1), or act in response to pRb modulation (e.g., E2F8 and NAP1L1) (12)(13)(14)(15)(16)(17)(18)(19)(20)(21)(22).