Human chromosome band 16q24 commonly undergoes loss of heterozygosity (LOH) in human hepatocellular carcinoma (HCC). To further localize the region of deletion on 16q24 and to evaluate the genetic role of 17-beta-HSD, which is near 16q24, in HCC, we examined the pattern of loss of heterozygosity in 88 HCC patients. DNAs from 88 pairs of HCCs and corresponding non-tumor parts were prepared. Loss of heterozygosity on chromosomes 16q24 was investigated by 11 sets of microsatellite markers. Mutation analysis of type II 17-beta-HSD was performed by automatic sequencing. LOH on 16q24 for at least 1 locus was found in 43 of the 88 tumor DNAs (49%). Three non-overlapping regions of frequent LOH were defined in these 43 tumors with partial deletions. The first region was between D16S516 loci and D16S507, encompassed by a 1-cM region, defined by the D16S504. The second region was defined by the 17HSDB2 locus between D16S505 and D16S422, encompassed approximately by a 1-cM region. The third region was between D16S520 and D16S413, defined by D16S3048, encompassed approximately by a 4-cM region. Homozygous deletions of any exons in 17HSDB2 gene were identified in 7 of 27 cases (26%). Automated sequencing analysis of 17HSDB2 failed to demonstrate mutations in any of these specimens. Our data suggest that the 17HSDB2 locus is a frequent target of deletion in HCC but the inactivation of 17HSDB2 may not involve sequence mutations. Furthermore, the presence of the other 2 frequent LOH regions suggest that the putative tumor suppressor genes at these locations might be involved in the development of HCC. © 2001 Wiley-Liss, Inc. Hepatocellular carcinoma (HCC) is a malignancy with high incidence in Asia and South Africa. 1,2 In Taiwan, it ranks first in cancer mortality. The disease is known to be closely associated with chronic hepatitis B or C viral infection, 1,3 or exposer to aflatoxin B 1 and environmental factors. 1,4 The molecular mechanism of hepatocarcinogenesis, however, remains to be clarified.Recent studies have indicated that in HCC, frequent aberrations are present in several genomic regions, including 1p, 4q, 5q, 6q, 8p, 8q, 10q, 11p, 13q, 16q, 17p and 22q. 5-16 It has been suggested that accumulation of these genetic changes that affect the expression of oncogenes and tumor suppressor genes, occurred in a stepwise manner during the development and progression. Among these alterations, LOH on chromosome 16q has been reported to occur more frequently in HCCs of poor differentiation or larger size, and with metastasis. 16,17 Recently, in a comprehensive analysis of LOH and chromosomal abnormality in HCC, 12,18 we also identified frequent LOH on chromosome 16q, confirming that candidate tumor suppressor genes may be located on this chromosome.Deletion and rearrangement of chromosome 16q are also frequently seen in other cancers, including breast cancers, prostate carcinoma and Wilms' tumor. 17,19 -25 The commonly deleted regions in these tumors have been identified at 16q22.1 and 16q24 -qter. It is difficult, howev...