We have generated eight mAbs (MW1-8) that bind the epitopes polyglutamine (polyQ), polyproline (polyP), or the C terminus of exon 1 in huntingtin (htt) protein. In the brains of Huntington's disease (HD) mouse models, the anti-polyQ mAbs bind to various cytoplasmic compartments, whereas the anti-polyP and anti-C terminus mAbs bind nuclear inclusions containing htt. To use these mAbs as intracellular perturbation agents, we have cloned and expressed the antigen-binding domains of three of the mAbs as single-chain variable region fragment Abs (scFvs). In 293 cells cotransfected with htt exon 1 containing an expanded polyQ domain, MW1, MW2, and MW7 scFvs colocalize with htt exon 1. Moreover, these scFvs coimmunoprecipitate with htt exon 1 in cell extracts. In perturbation experiments, MW7 scFv, recognizing the polyP domains of htt, significantly inhibits aggregation as well as the cell death induced by mutant htt protein. In contrast, MW1 and MW2 scFvs, recognizing the polyQ stretch, stimulate htt aggregation and apoptosis. Therefore, these anti-htt scFvs can be used to investigate the role of the polyP and polyQ domains in HD pathogenesis, and antibody binding to the polyP domain has potential therapeutic value in HD. H untington's disease (HD), a fatal neurodegenerative disorder, is caused by abnormal expansion of CAG repeats that translate into an extended polyglutamine (polyQ) stretch in exon 1 of the protein huntingtin (htt) (1). Mutant htt with Ͼ40 CAG repeats gains a toxic function and induces death in subpopulations of neurons in the striatum and cortex (2-4). A hallmark of HD and other polyQ diseases is the formation of insoluble protein aggregates in affected neurons (5, 6). A major component of the aggregates in HD is the N terminus exon 1 of mutant htt (2,(5)(6)(7)(8). Abnormal behavior and aggregate formation are also seen in transgenic mice expressing htt exon 1 with an expanded polyQ stretch (9-11).Neuronal death in HD has been variously attributed to polyQ toxicity, activation of caspases, interference with transcriptional machinery, and sequestration͞inactivation of wild-type htt and other important cellular factors (12-17). Several proteins that interact with exon 1 of htt have been identified (14,(18)(19)(20)(21)(22)(23), and although the function of these proteins in the etiology of HD is unclear, the transcriptional coactivator CREB-binding protein (CBP) as well as proteins with WW domains have been implicated in the HD pathology (18-21). Binding of htt to CBP has been shown to repress CBP-mediated gene expression (18,19). Moreover, ectopic expression of CBP appears to block httmediated toxicity, indicating that transcriptional dysregulation may contribute to HD pathogenesis (19,24). Several different WW-containing proteins have been shown to interact with proline-rich domains in the C terminus of htt exon 1 (20, 21). These interactors include spliceosomes (HYPA and HYPC) and transcription factors (HYPB), which appear to have a higher affinity for expanded polyQ htt (20). By using specific anti...