In order to find efficient catalysts for low-temperature selective catalytic reduction with ammonia (NH 3 -SCR), several MnO 2 with different crystal structure have been supported on high-purity palygorskite (Pal) by a hydrothermal method. The effect of MnO 2 crystal structures on the NH 3 -SCR performance of the catalysts was investigated. All catalysts were characterized by X-ray diffraction (XRD), N 2 adsorption-desorption, Raman spectrum, Thermo gravimetric analysis/Differential thermo gravimetric (TG/DTG), ammonia-temperature programmed desorption (NH 3 -TPD), hydrogen-temperature programmed reduction (H 2 -TPR), Transmission electron microscope (TEM) and X-ray energy dispersive spectroscopy (EDS) and X-ray photoelectron spectrometer (XPS). The presented results suggested that α-MnO 2 /Pal catalyst exhibit the highest catalytic activity among four type MnO 2 /Pal catalysts in the temperature range of 50-400°C, own promising stability during a 24 h continuous denitration experiment. Furthermore, the crystal structure affords α-MnO 2 /Pal with the highest specific surface area and more acidic sites, which is beneficial for the SCR reaction. It has improved the NH 3 adsorption ability and catalytic activity of the catalyst.