LRRK2 mutations are a major cause of Parkinson's disease. Pathogenicity of LRRK2 loss-of-function is controversial, as knockout in rodents induces no brain-specific effects and knockdown studies in zebrafish are conflicting. Here we show that deletion of the ~60-kbp-long zebrafish lrrk2 locus elicits a pleomorphic, albeit transient brain phenotype in maternal-zygotic mutants (mzLrrk2). Intriguingly, 11-month-old mzLrrk2 adults display increased amine catabolism. Additionally, we find decreased mitosis in the larval brain and reduced stab injury-induced neuronal regeneration in the adult telencephalon. Finally, hypokinesia associates with loss of lrrk2 in larvae. Our results demonstrate that lrrk2 knockout has an early neurodevelopmental effect. We report for the first time perturbed amine catabolism in a LRRK2 knockout. We propose mzLrrk2 zebrafish as a valuable tool to study LRRK2 loss-of-function in vivo, and provide a link between LRRK2 and the control of basal cell proliferation in the brain, potentially critical upon challenges like brain injury.Recently, a third paper rekindled the initial claims, describing a lrrk2 MO-induced phenotype with macroscopic developmental abnormalities (24). These discrepancies revived concerns over the consistency of MO-induced knockdown to assess gene loss-of-function due to the variability and transiency of induced changes and the risk of off-target effects (25). Although the analysis of MO-induced phenotypes may still provide useful information, their validation would inevitably entail the generation of reliable null alleles (26).Using the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein-9 nuclease (Cas9) genome-editing tool, we report here the deletion of the ~60-kbp-long zebrafish lrrk2 locus containing the entire open reading frame (ORF), resulting in an unambiguous null allele. This is the first report describing LRRK2 deficiency in a vertebrate in vivo model where no residual or truncated protein is produced.We characterized the phenotype of the brain, as the organ of possibly highest relevance for PD. We find that maternal-zygotic lrrk2 mutants display a pleomorphic, but transient neurodevelopmental phenotype, including increased apoptosis, delayed myelination, reduced and morphologically abnormal microglia/leukocytes, and reduced catecholaminergic neurons. We also find a correlation between hypokinesia and loss of lrrk2 in larvae. Importantly, for the first time in a LRRK2 knockout model, we report perturbed amine catabolism in older animals. Finally, we observe decreased mitosis in the larval brain and impaired neuronal regeneration after stabbing the adult telencephalon. Our results suggest a link between zebrafish Lrrk2 and the control of cell proliferation in the brain, with crucial implications for the self-healing capacity upon lesion.