Background
Protein kinase membrane-associated tyrosine/threonine (
PKMYT1
) has been found in many tumors, but its association with clear cell renal cell carcinoma (ccRCC) remains unclear.
Material/Methods
PKMYT1
expression in ccRCC was examined in the Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO), and Tumor Immune Estimation Resource databases. The correlation between
PKMYT1
expression and clinicopathological parameters was explored via the chi-square test. Receiver operating characteristic curves were used to estimate the diagnostic performance of
PKMYT1
. Kaplan-Meier curves, a Cox model, nomogram, time-dependent receiver operating characteristic curves, and decision curve analysis (DCA) were used to evaluate the prognostic value and clinical utility of
PKMYT1
. Genes coexpressed with
PKMYT1
in ccRCC were identified based on TCGA, the gene expression profiling interactive, and cBioPortal. Gene Set Enrichment Analysis revealed biological pathways associated with
PKMYT1
in ccRCC.
Results
Weighted gene coexpression network analysis identified
PKMYT1
as one of the genes most significantly correlated with progression of histological grade.
PKMYT1
was significantly upregulated in ccRCC compared with normal tissue (P<0.001), with a trend toward differentiating between individuals with ccRCC and those who were healthy (area under the curve=0.942). High
PKMYT1
expression was correlated with unsatisfactory survival (hazard ratio=1.67, P=0.001), indicating that it is a risk factor for ccRCC. A nomogram incorporating
PKMYT1
level was created and showed a clinical net benefit.
PKMYT1
was strongly positively correlated with the anti-silencing function of 1B histone chaperone (
ASF1B
) gene in ccRCC.
Conclusions
PKMYT1
is upregulated in ccRCC and its presence indicates poor prognosis, making it a potential therapeutic target for ccRCC.