MA026,
a cyclic lipodepsipeptide, opens the tight junction (TJ)
probably via binding to claudin-1. We reported that (1) TJ-opening
activity is dependent on the amino acid sequence order at Glu10-Leu11;
(2) an epimer at the C3 position of the N-terminal
acyl tail decreased the TJ-opening activity; and (3) the epimers D-Leu1/L-Gln6
and L-Leu1/D-Gln6 showed more potent TJ-opening activity than natural
MA026, although no systematic structure–activity relationship
(SAR) study was conducted. Here, we report the three-dimensional structure
and systematic SAR study of MA026. X-Ray crystallography and circular
dichroism analysis of MA026 revealed that MA026 forms a left-handed
α-helical structure, and hydrophobic amino acids are clustered
on one side. Furthermore, the SAR results clearly showed that the
hydrophobic region of MA026 is important for TJ-opening activity.
These results suggest that MA026 interacts with claudin-1 via the
hydrophobic cluster region and provide novel structural insights toward
the development of a TJ opener targeting claudin-1.