The West Qinling Orogenic Belt (WQOB) in central China records the tectonic evolution and deep geodynamics process associated with plate collision on the northeastern margin of the Qinghai–Tibet Plateau. The study of the deep–seated West Qinling structure is beneficial for revealing the evolution of the West Qinling crust during the continental collision orogeny, and also has significance for mineral exploration. In this study, the crustal structure and the distribution of major faults in the West Qinling Orogen are calculated by processing geophysical aeromagnetic and ground gravity data. The density and magnetic susceptibility differences between the West Qinling crust and the upper mantle are calculated by fitting, and the depth and trend of the faults related are inferred from the gravity and magnetic inversion results. Due to the overall subduction of the lower crust of the Ruoergai to the West Qinling Orogenic Belt, the structural deformation within the West Qinling is strong, and the geophysical magnetic field and gravity field are suddenly changed. It is indicated that the formation of the Diebu–Sanhe fault may have a strong correlation with the Mianlue suture zone, and their intersection may penetrate into the lower crust at a depth of about 50 km or more. The West Qinling structure represents important conduits for migrating magmatic–derived hydrothermal fluids. During the continental collision, the West Qinling major faults provided hydrothermal migration channels for ore–forming materials in different tectonic periods. Meanwhile, multiple the geological activities led to the formation of mineral deposits related to magmatic hydrothermal fluids.