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Magnetic separation processes are known as integrated bioanalytical protein purification method since decades and are well described. Typically, magnetic separation is used for purification tasks like enzyme, cell [5] as well as protein purification [6][7][8], such as the recovery of immunoglobulins from cell supernatants or serum [9,10], recycling of immobilized enzymes [11][12][13][14][15], as well as cell labeling and sorting [16][17][18]. With the aim of overcoming this prejudice, a comprehensive process development approach is presented, based on a GMP-compliant magnetic separator, including an optimization of the batch adsorption process, implementation into a technical-scale, and the development and validation of cleaning routines for the device.