The Alps are an important hotspot of species diversity and endemism, as well as a presumed glacial refugium of several species’ groups including land snails. The recent ranges of Alpine endemics are well known, but their fluctuations during the postglacial period mirroring local climate changes are understudied. By analysing five Late Glacial and Holocene mollusc successions from two areas in the southernmost part of the Bohemian Massif (Czech Republic) situated about 100 km north of the Alps, we reveal details of these fluctuations. The Alpine endemic rocky dweller Chilostoma achates had reached the southern part of the Bohemian Massif already in the Late Glacial and disappeared in the Mid-Holocene canopy forest optimum. On the contrary, the northern boundaries of Alpine canopy forest epigeic snails extended further north than today at the turn of the Middle and Late-Holocene, pointing to a more favourable forest microclimate. The earliest known occurrences of several temperate canopy forest central European species, especially Causa holosericea and Discus perspectivus, imply the role of different areas in the Alps as their glacial refugia.