Environmental factors affect the transmission intensity, seasonality, and geographical distribution of malaria, and together with the vector, the human, and the parasite compose the malaria system. Strategies that alter the environment are among the oldest interventions for malaria control, but currently are not the most prominent despite historical evidence of their effectiveness. The importance of environmental factors, the role they play considering the current goals of malaria eradication, the different strategies that can be adopted, and the current challenges for their implementation are discussed. As malaria elimination/eradication takes a prominent place in the health agenda, an integrated action, addressing all elements of the malaria system, which contributes to improved knowledge and to building local capacity and that brings about positive effects to the health of the local population has the greatest chance to produce fast, effective, and sustainable results.