Manganese Is Essential for Catalytic Activity ofEscherichia coliAgmatinase

Carvajal, Nelson; López, Vasthi; Salas, Mónica; Uribe, Elena; Herrera, Paula; Cerpa, Juan

doi:10.1006/bbrc.1999.0709

Cited by 44 publications

(32 citation statements)

References 22 publications

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“…Identical behaviour was previously described, and confirmed here (Fig. 2), for wild-type agmatinase and this was interpreted as supporting the presence of a binuclear metal center in the active site of fully activated agmatinase [9]. The K m for agmatine (1.6 ± 0.1 mM) and the K i for competitive inhibition by putrescine (12 ± 2 mM), were also essentially equal for wild-type and D153N agmatinases.…”

Section: R E S U L T S a N D Discussionsupporting

confidence: 90%

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Insights into the reaction mechanism of Escherichia coli agmatinase by site‐directed mutagenesis and molecular modelling

Salas

Rodrı́guez

López

et al. 2002

European Journal of Biochemistry

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Upon mutation of Asp153 by asparagine, the catalytic activity of agmatinase (agmatine ureohydrolase, EC 3.5.3.11) from Escherichia coli was reduced to about 5% of wild-type activity. Tryptophan emission fluorescence (k max ¼ 340 nm), and CD spectra were nearly identical for wildtype and D153N agmatinases. The K m value for agmatine (1.6 ± 0.1 mM), as well as the K i for putrescine inhibition (12 ± 2 mM) and the interaction of the enzyme with the required metal ion, were also not altered by mutation. Threedimensional models, generated by homology modelling techniques, indicated that the side chains of Asp153 and Asn153 can perfectly fit in essentially the same position in the active site of E. coli agmatinase. Asp153 is suggested to be involved, by hydrogen bond formation, in the stabilization and orientation of a metal-bound hydroxide for optimal attack on the guanidinium carbon of agmatine. Thus, the disruption of this hydrogen bond is the likely cause of the greately decreased catalytic efficiency of the D153N variant.Keywords: agmatinase; Asp153; site-directed mutagenesis; homology-modelling; E. coli.Agmatinase (agmatine ureohydrolase, EC 3.5.3.11) catalyses the hydrolysis of agmatine to putrescine and urea [1]. Agmatine, which results from decarboxylation of arginine by arginine decarboxylase [2], is a metabolic intermediate in the biosynthesis of putrescine and higher polyamines [1] and may have important regulatory roles in mammals [3][4][5].Agmatinases from Escherichia coli and human tissues, and putative agmatinases from Synechocystic sp. Schizosaccharomyces pombe and Bacillus subtilis, have been cloned and the deduced amino acid sequences indicate their homology to all sequenced arginases [4][5][6][7]; all these enzymes catalyse an hydrolytic reaction with production of urea. The question arises therefore as to whether a similar or identical mechanism is involved in catalysis by these enzymes, which apparently evolved from a single primordial protein [6,7]. In this context, both enzymes exhibit an absolute requirement for Mn 2+ for catalytic activity [8,9]; the well established requirement of a binuclear metal cluster for full catalytic activity of arginase [8] is probably also valid for agmatinase [9]. This is reinforced by the fact that residues known to be metal ligands in arginase are strictly conserved in the sequence of agmatinase [7]. Moreover, a critical role for one conserved histidine residue (His163 in the sequence of E. coli agmatinase) has been shown by chemical modification and site-directed mutagenesis of human and rat liver arginases [10,11] and E. coli agmatinase [12]; similar information was deduced from X-ray crystallographic data for arginase from Bacillus caldovelox [13].Based on the crystal structure of rat liver arginase, it was suggested that arginine hydrolysis involves the participation of a metal-bound hydroxide, which is stabilized for optimal nucleophilic attack at the substrate, by donating an hydrogen bond to Asp128 [8,14,15]. In this connection, the D128G variant of human...

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Section: R E S U L T S a N D Discussionsupporting

confidence: 90%

“…This is interesting if one considers a catalytic mechanism involving a nucleophilic attack of a metal-bound hydroxide on the guanidinium carbon of agmatine [8,9]. By donating an hydrogen bond to Asp153, the nucleophile would be stabilized and oriented for optimal catalysis.…”

Section: R E S U L T S a N D Discussionmentioning

confidence: 99%

Insights into the reaction mechanism of Escherichia coli agmatinase by site‐directed mutagenesis and molecular modelling

Salas

Rodrı́guez

López

et al. 2002

European Journal of Biochemistry

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“…Many enzymes contain two or more metal ions in the active site, exploiting collaboration among the metal centers in the catalytic action. Examples of multinuclear metalloenzymes catalyzing hydrolysis of acyl derivatives and related compounds are methionine aminopeptidase (4), metallo-b-lactamase (5), proline dipeptidase (prolidase) (6), urease (7), and agmatinase (8). In addition, there are a large number of multinuclear metalloenzymes that catalyze several other types of reactions (e.g., nucleic acid hydrolysis, synthetic transformations, or oxidation-reduction).…”

Section: Introductionmentioning

confidence: 99%

Peptide‐ or Protein‐Cleaving Agents Based on Metal Complexes

Chei¹,

Suh²

2007

Progress in Inorganic Chemistry

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“…In reality, arginase and agmatinase belong to the arginase family of proteins, which apparently diverged from a common evolutionary origin, resulting in different substrate specificities [7]. Our interest has been concentrated to obtain functional and structural supports for the homologies between these enzymes [10][11][12].…”

Section: Introductionmentioning

confidence: 99%