b-Conglycinin, one of the major soybean (Glycine max) seed storage proteins, is folded and assembled into trimers in the endoplasmic reticulum and accumulated into protein storage vacuoles. Prior experiments have used soybean b-conglycinin extracted using a reducing buffer containing a sulfhydryl reductant such as 2-mercaptoethanol, which reduces both intermolecular and intramolecular disulfide bonds within the proteins. In this study, soybean proteins were extracted from the cotyledons of immature seeds or dry beans under nonreducing conditions to prevent the oxidation of thiol groups and the reduction or exchange of disulfide bonds. We found that approximately half of the a#-and a-subunits of b-conglycinin were disulfide linked, together or with P34, prior to amino-terminal propeptide processing. Sedimentation velocity experiments, size-exclusion chromatography, and two-dimensional polyacrylamide gel electrophoresis (PAGE) analysis, with blue native PAGE followed by sodium dodecyl sulfate-PAGE, indicated that the b-conglycinin complexes containing the disulfide-linked a#/a-subunits were complexes of more than 720 kD. The a#-and a-subunits, when disulfide linked with P34, were mostly present in approximately 480-kD complexes (hexamers) at low ionic strength. Our results suggest that disulfide bonds are formed between a#/a-subunits residing in different b-conglycinin hexamers, but the binding of P34 to a#-and a-subunits reduces the linkage between b-conglycinin hexamers. Finally, a subset of glycinin was shown to exist as noncovalently associated complexes larger than hexamers when b-conglycinin was expressed under nonreducing conditions. The large majority of seed storage proteins from the leguminous species are globulins with sedimentation coefficients of 7 to 8 S (vicilin) and 11 to 12 S (legumin). The corresponding proteins from soybean (Glycine max) are called b-conglycinin and glycinin, respectively (Casey, 1999). The b-conglycinin from soybean seeds is isolated as a trimer with sedimentation coefficients between 7 and 8 S (Thanh and Shibasaki, 1976;Nielsen and Nam, 1999). The size of b-conglycinin complexes depends on the ionic strength of the solution. b-Conglycinin is a trimer at higher than 0.2 M ionic strength, but at neutral pH, it associates into hexamers at decreasing ionic strength (Thanh and Shibasaki, 1979). The b-conglycinin trimers are mixtures of isoforms consisting of different combinations of the three types of subunits, designated a#, a with M r of 57,000, and b with M r of 42,000 (Thanh and Shibasaki, 1978;Davies et al., 1985;Nielsen and Nam, 1999). The a#-, a-, and b-subunits are synthesized in the endoplasmic reticulum (ER) of the cotyledon cell as polypeptides with a signal peptide and a propeptide (prepro a#-and prepro a-subunits) or as polypeptides with only a signal peptide (pre-b-subunit; Sengupta et al