Mapping of the constitutive lysyl-tRNA synthetase gene of Escherichia coli K-12

Emmerich, Ralf; Hirshfield, Irvin N.

doi:10.1128/jb.169.11.5311-5313.1987

Cited by 29 publications

(18 citation statements)

References 11 publications

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“…The constitutive gene, lysS, maps at 62.1 min (9), whereas the inducible gene, lysU, has been localized to 93.5 min (28). lysS mutants and pseudorevertants derived from them, which constitutively express lysU because of an rlu (for regulation of lysU) mutation, have been isolated previously (16).…”

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Partial characterization of a lysU mutant of Escherichia coli K-12

et al. 1991

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The Escherichia coli K-12 strain GNB10181 shows no inducible lysyl-tRNA synthetase (LysRS) activity. Two-dimensional gel electrophoretic analysis of the polypeptides synthesized by this strain indicates that the normal lysU gene product, LysU, is absent. When both GNB10181 and its parent, MC4100, were grown at elevated temperatures (42 to 45 degrees C) no significant difference between their growth rates was observed. The lysU mutation was transferred to other E. coli K-12 backgrounds by using P1 transduction. The lysU transductants behaved comparably to their lysU+ parents at different growth temperatures. Therefore, the LysU proteins does not appear to be essential for growth at high temperatures, at least under the conditions examined here. In addition, lysU transductants were found to be defective for inducible lysine decarboxylase, (LDC), inducible arginine decarboxylase (ADI), and melibiose utilization (Mel), which are all missing in GNB10181. Complementation of the above missing functions was achieved by using the Clarke-Carbon plasmids pLC4-5 (LysU LDC) and pLC17-38 (LysU Mel ADI). From these experiments, it appears that GNB10181 has suffered a chromosomal deletion between 93.4 and 93.7 min, which includes the lysU gene. By using plasmid pLC17-38, the position of ADI on two-dimensional gels was identified. Finally, lysS delta lysU double mutants were constructed which can potentially be used as positive selection agents for the isolation of LysRS genes from other sources.

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Partial characterization of a lysU mutant of Escherichia coli K-12

et al. 1991

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“…Additionally, LysRS was normally induced in ECOR strains EC10, EC16, EC40, and EC50, suggesting the presence of two LysRS genes in these strains as well. The two distinct fragment sizes for the two lysU homologs is consistent with the widely separated genomic locations of the lysS and lysU genes in E. coli K-12 (13,19,50 E. coli K-12 has been our paradigm for the study of the dual-gene LysRS system, and it is known that regulation of the lysU gene is complex and environmentally sensitive. Expression of lysU, but not that of lysS, is stimulated by nutritional or environmental factors such as L-leucine (23), L-leucine dipeptides (23,24), L-alanine (23,24), heat shock (21, 50), anaerobiosis (28), or growth to low pH in rich medium (18,20).…”

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confidence: 79%

“…One gene, designated lysS, is expressed constitutively and is located at 62 min on the E. coli chromosome (13). The second gene, designated lysU, has been shown to map at approximately 93.5 min on the E. coli chromosome (50).…”

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The occurrence of duplicate lysyl-tRNA synthetase gene homologs in Escherichia coli and other procaryotes

Saluta

Hirshfield

1995

J Bacteriol

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The lysyl-tRNA synthetase (LysRS) system of Escherichia coli K-12 consists of two genes, lysS, which is constitutive, and lysU, which is inducible. It is of importance to know how extensively the two-gene LysRS system is distributed in procaryotes, in particular, among members of the family Enterobacteriaceae. To this end, the enterics E. coli K-12 and B; E. coli reference collection (ECOR) isolates EC2, EC49, EC65, and EC68; Shigella flexneri; Salmonella typhimurium; Klebsiella pneumoniae; Enterobacter aerogenes; Serratia marcescens; and Proteus vulgaris and the nonenterics Pseudomonas aeruginosa and Bacillus megaterium were grown in AC broth to a pH of 5.5 or less or cultured in SABO medium at pH 5.0. These growth conditions are known to induce LysRS activity (LysU synthesis) in E. coli K-12. Significant induction of LysRS activity (twofold or better) was observed in the E. coli strains, the ECOR isolates, S. flexneri, K. pneumoniae, and E. aerogenes. To demonstrate an association between LysRS induction and two distinct LysRS genes, Southern blotting was performed with a probe representing an 871-bp fragment amplified from an internal portion of the coding region of the lysU gene. In initial experiments, chromosomal DNA from E. coli K-12 strain MC4100 (lysS ؉ lysU ؉ ) was double digested with either BamHI and HindIII or BamHI and SalI, producing hybridizable fragments of 12.4 and 4.2 kb and 6.6 and 5.2 kb, respectively. Subjecting the chromosomal DNA of E. coli K-12 strain GNB10181 (lysS ؉ ⌬lysU) to the same regimen established that the larger fragment from each digestion contained the lysU gene. The results of Southern blot analysis of the other bacterial strains revealed that two hybridizable fragments were obtained from all of the E. coli and ECOR collection strains examined and S. flexneri, K. pneumoniae, and E. aerogenes. Only one lysU homolog was found with S. typhimurium and S. marcescens, and none was obtained with P. vulgaris. A single hybridizable band was found with both P. aeruginosa and B. megaterium. These results show that the dual-gene LysRS system is not confined to E. coli K-12 and indicate that it may have first appeared in the genus Enterobacter.

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“…Escherichia coli has two distinct genes for lysyl-tRNA synthetase (LysRS), lysS and lysU, which is a rare exception to the rule of one synthetase per amino acid (8,33; for a review, see reference 25). The two proteins have identical aminoacylation activities in vitro, so a rationale for this exception is not immediately obvious.…”

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