Investigating
the structure of active ingredients, such as agrochemicals
and their associated metabolites, is a crucial requisite in the discovery
and development of these molecules. In this study, structural characterization
by electron-induced dissociation (EID) was compared to collisionally
activated dissociation (CAD) on a series of agrochemicals. EID fragmentation
produced a greater variety of fragment ions and complementary ion
pairs leading to more complete functional group characterization compared
to CAD. The results obtained displayed many more cross-ring fragmentation
of the pyrimidine ring compared to the pyridine ring. Compounds that
consisted of one aromatic heterocyclic moiety (azoxystrobin, fluazifop
acid, fluazifop-p-butyl, and pirimiphos-methyl) displayed
cross-ring fragmentation while compounds with only aromatic hydrocarbon
rings (fenpropidin and S-metolachlor) displayed no cross-ring fragmentation.
The advantages of high-resolution accurate mass spectrometry (HRAM
MS) are shown with the majority of assignments at ppb range error
values and the ability to differentiate ions with the same nominal
mass but different elemental composition. This highlights the potential
for HRAM MS and EID to be used as a tool for structural characterization
of small molecules with a wide variety of functional groups and structural
motifs.