The purpose of this study was to evaluate the Electromyography (EMG), thickness of the masseter and temporal muscles, maximal bite force in individuals with head and neck cancer treated with radiotherapy. The patterns of the muscle activity were evaluated by means of the EMG recordings of the masseter and temporal muscles; bilaterally during the following clinical conditions: rest, protrusion, right and left lateral excursions and Maximum Habitual Intercuspation (MHI). Muscle thickness was evaluated using ultrasound at rest and in MHI. Maximal bite force in the right and left molar regions of 10 fully dentate individuals with head and neck cancer was evaluated after radiotherapy and compared with a control group. The EMG means showed that at rest, protrusion, and left lateral excursion, there were statistically significant differences (p < 0.05). On evaluation with ultrasound, the muscle thickness values were higher for individuals with head and neck cancer at rest and in MIH, with statistically significant results found only for the right temporal during the MIH. Participants with head and neck cancer treatment were evaluated in the present study showed higher electromyographic activity when compared with the control group for all clinical situations. The treatment used with patients undergoing head and neck cancer increased the electromyographic activity, the muscle thickness, and the bite force when compared to control subjects. The results suggest a muscle dysfunction of the stomatognathic system in individuals with head and neck cancer treatment evaluated in the present study.