Recombinant measles virus nucleoprotein-RNA (N-RNA) helices were analyzed by negative-stain electron microscopy. Three-dimensional reconstructions of trypsin-digested and intact nucleocapsids coupled to the docking of the atomic structure of the respiratory syncytial virus (RSV) N-RNA subunit into the electron microscopy density map support a model that places the RNA at the exterior of the helix and the disordered C-terminal domain toward the helix interior, and they suggest the position of the six nucleotides with respect to the measles N protomer.The RNA genome of nonsegmented negative-strand RNA viruses is tightly and regularly encapsidated by the viral nucleoprotein N, providing flexible helical templates for viral transcription and replication. Upon heterologous expression, nucleoproteins associate not only with long cellular RNAs to form helical nucleocapsids undistinguishable from the viral ones but also with short cellular RNAs that noncovalently close up into N-RNA rings. In the rings, N-RNA is sterically constrained in a biologically inactive form, but the rings have an advantage of being rigid enough for X-ray crystallography. Conversely, the helical assemblies are challenging for electron microscopy (EM) analysis because of their flexibility but are the biologically relevant ones.The atomic structures of N-RNA rings of rabies virus and vesicular stomatitis virus (both rhabdoviruses) (1, 10) reveal the shielding of RNA between two domains of N in a positively charged cleft situated inside the rings. Extended N-and Cterminal domains reach out to neighboring N protomers in order to stabilize and rigidify the structure. Recently, the structure of N-RNA rings of respiratory syncytial virus (RSV; a paramyxovirus) was determined (24). The global architecture of the nucleoprotein is very similar to that of the rhabdoviruses, although there are 7 ribonucleotides (nt) instead of 9 bound to each N protomer. However, the lateral contacts between adjacent N subunits of the ring confer to it an opposite curvature, which results in an outward RNA groove location. RSV N has an N-terminal exchange domain similar to that of rhabdovirus N, but the C-terminal domain is slightly different, as it is not clearly involved in contacts between subsequent N protomers. Is this inversion of the subunit orientation due simply to steric constraints in the ring, or does it also take place in a helical nucleocapsid? Tawar and coworkers modeled an RSV N-RNA helix but could not directly dock the atomic structure of RSV N into their helical EM reconstruction (24).A sequence alignment between RSV N and measles virus N (MeV N), both paramyxovirus nucleoproteins, is difficult to interpret because of the lack of amino acid identity. However, a comparison of the secondary structure elements observed in the RSV N structure, with a secondary structure prediction for MeV N (6) (Fig. 1), shows even more similarity than that between rhabdovirus and RSV N. This comparison also shows that the -hairpin projecting from the distal end of the RSV N ...