This paper describes optimal three-phase filter design based on the measured dominant mode of interference. The modes of interference are determined by simultaneously measuring currents and voltages in all phases in time domain, using a multi-channel digitizer. The measured results are evaluated in frequency domain after fast Fourier transform. While usual electromagnetic compatibility measurement equipment is evaluating only one single channel, the described multi-channel technique allows rapid estimation of dominant modes, for stationary loads, but also for cyclo-stationary, transient and nonlinear loads. Using this method, the topology of power line filter for sufficient suppression of a specific mode of interference from commercial of the shelf three-phase power converter is estimated.