Impact Statement: Using a specialized camera that corrects for eye blur, millions of single blood cells are 9 imaged and their speed measured, as they travel through the largest-to-smallest vessels of the retina. 10 Abstract: Tissue light scatter limits the visualization of the microvascular network deep inside the living 11 mammal. The transparency of the mammalian eye provides a noninvasive view of the microvessels of the retina, a 12 part of the central nervous system. Despite its clarity, imperfections in the optics of the eye blur microscopic 13 retinal capillaries, and single blood cells flowing within. This limits early evaluation of microvascular diseases 14 that originate in capillaries. To break this barrier, we use adaptive optics to noninvasively measure single-cell 15 blood flow, in one of the most widely used research animals: the C57BL/6J mouse. Flow ranged four orders of 16 magnitude (0.0002-1.55 µL min -1 ) across the full spectrum of retinal vessel diameters (3.2-45.8 µm), without 17 requiring surgery or contrast dye. Here we describe the data collection approach using adaptive optics and provide 18 an analysis pipeline that can measure millions of blood cell speeds automatically. 19 93 noninvasively in the smallest to largest vessels of the mouse retinal circulation (lumen diameters: 3.2-45.8 µm); 94 without requiring exogenous contrast agents to facilitate measurement. Measured flow rate per vessel ranged four 95 orders of magnitude (0.0002-1.55 µL min -1 ) across the complete retinal vascular tree, from the largest vessel near 96 the optic disk to the smallest capillary. In addition to aiding basic science investigation, the non-invasive 97 approach provides a comprehensive array of bioreporters of microvascular perfusion, including: cell velocity, 98 lumen diameter, flow rate, single-cell flux in capillaries, pulsatile and laminar flow, and indices of intrinsic 99 temporal and spatial modulations in flow. To our knowledge, we provide the first measurement of cross-sectional 100 velocity profile and the first absolute measurement of pulsatile velocity in the mouse retina. We also provide the 101 4 first measures of mean (and pulsatile) velocity and flow rate in medium and small vessels (capillaries) of the 102 mouse retina. We found that there is a heterogenous distribution of velocity, flux and other hemodynamic 103 parameters in vessels of varying generation/size, showing that diameter alone is a poor predictor of 104 microcirculation hemodynamics in the central nervous system. Through the innovations presented in this work, 105 imaging the complete and intact perfusion system of the mammalian retina bridges an important gap in studying 106 perfusion dynamics in deep microvascular beds within the living body. And due to the central nervous system 107 origin of the retina, this method provides a powerful way to noninvasively study microvascular integrity and 108 kinetics in a portion of the living brain. 109 Methods 110 Animals 111 19 normal C57BL/6J mice (The Jackson Laboratory stock 000664...