The dependence of EMF, current and voltage at a fixed load, and the fuel cell inner resistance on anolyte composition has been studied using microbial fuel cell (MFC) model. Strain Gluconobacter oxydans subsp. industrius VKM B-1280 was a biocatalyst; glucose was used as a fuel. The following anolyte compositions were considered: (1) water-soluble mediator 2,6-dichlorophenol indophenol (DCPIP) in combination with suspension and immobilized bacteria and (2) hydrophobic mediators ferrocene and 1,1'-dimethylferrocene in combination with immobilized bacteria. It was shown that DCPIP in combination with immobilized bacteria versus the cell suspension increases the generated EMF for 36%, current for 25%, power for 56%, and inner resistance for 14%. Ferrocene seems to be more preferable as compared with 1,1'-dimethylferrocene. Ferrocene gives higher values of the generated EMF (for 8%) and current (for 47%), as well as decreases the inner resistance of MFC for 38%. The proposed system can be used for rapid qualitative and quantitative assessment of the "fuel-cell-mediator-electrode" interaction under charge transfer and is used in the search of effective anolyte compositions.