The assessment of metabolism of microobjects is a topical problem of biology. Studies of cells and subcellular structures and their responses to extracellular stress stimuli are of fundamental importance. Important practical applications of such studies include the selection of biologically active substances and the diagnostics of metabolic disturbances. The solution of these problems requires methods that allow quantitative analysis of physiological processes in real time using nonfixed single cells, without utilization of fluorescent dyes or other invasive approaches which may introduce experimental artifacts. The heterogeneity of animal cells and microorganisms stimulates the development of novel methods for the analysis of physiological state of single cells and recording of individual response to changed microenvironment [1]. The method of coherent phase microscopy (CPM) developed by our group [2, 3] is based on representation of a real biological object as a spatially heterogeneous distribution of optical refraction index. The phase images obtained by interference techniques represent two-dimensional distributions of optical path difference (or phase thickness). Therefore, the structures with higher optical density are clearly distinguished in such phase images. Hence, the intracellular structures that have different refraction indices will be present in the static phase images. The local changes in the refraction index may be a result of metabolic processes and can be measured as changes in the phase thickness of intracellular structures [2][3][4][5][6][7][8]. CPM was used to study the metabolic state of single large organelles (isolated mitochondria) [4 − 6], plant cells (bean chloroplasts) [7], cyanobacteria, and spores [3]. A decrease in the phase thickness induced by pharmacologic uncoupling of mitochondrial transmembrane potential of protons or inhibition of electron transport (deenergization) was detected [3 − 7]. These studies showed that it is possible to assess the response of living biological objects to changes in homeostasis by CPM.The purposes of this work were (1) to identify the optically dense structures in the whole (unfractionated) cells by the CPM method and (2) to determine optical parameters of the disturbances of the state of nucleoli induced by suppression of gene transcription.The experiments were performed with the cell lines NIH 3T3 (immortalized murine fibroblasts) and HCT116 (transformed human colon epithelium) cultured in Dulbecco's modified Eagle's medium supplemented with 10% bovine serum, 2 mM glutamine, and gentamicin. The cells were maintained at 37°ë in 5% ëé 2 humidified atmosphere. The cells were seeded on cover slips 24 h before experiments; the monolayer density at the day of experiments was 50-75%. The cells were incubated with pharmacological reagents; the cover slips were placed on a polished silicon substrate and analyzed by CPM. Single cells were first studied using the optical channel of CPM; then, their topograms and phase thickness profiles were measured. Abou...