Fatigue crack initiation in titanium alloys is typically accompanied by the formation of planar, faceted features on the fracture surface. In the present study, quantitative tilt fractography, electron backscatter diffraction (EBSD), and the focused ion beam (FIB) have been used to provide a direct link between facet topography and the underlying microstructure, including the crystallographic orientation. In contrast to previous studies, which have focused mainly on the a-phase crystal orientation and the spatial orientation of the facets, the present analysis concentrates on the features that lie in the plane of the facet and how they relate to the underlying constituent phases and their crystallographic orientations. In addition, due to the anisotropic deformation behavior of the three basal slip systems, the orientation of the b phase as it relates to facet crystallography was investigated for the first time. The implication of the b-phase orientation on fatigue crack initiation was discussed in terms of its effect on slip behavior in lamellar microstructures. The effect of the local crystallographic orientation on fatigue crack initiation was also investigated by studying cracks that initiated naturally in the earliest stages of growth, which were revealed by FIB milling. The results indicate that boundaries that are crystallographically suited for slip transfer tend to initiate fatigue cracks. Several observations on the effect of the crystallographic orientation on the propagation of long fatigue cracks were also reported.