Directional cell migration is a fundamental process in neural development. In
Caenorhabditis elegans
, Q neuroblasts on the left (QL) and right (QR) sides of the animal generate cells that migrate in opposite directions along the anteroposterior body axis. The homeobox (Hox) gene
lin-39
promotes the anterior migration of QR descendants (QR.x), whereas the canonical Wnt signaling pathway activates another Hox gene,
mab-5
, to ensure the QL descendants’ (QL.x) posterior migration. However, the regulatory targets of LIN-39 and MAB-5 remain elusive. Here, we showed that MIG-13, an evolutionarily conserved transmembrane protein, cell-autonomously regulates the asymmetric distribution of the actin cytoskeleton in the leading migratory edge. We identified
mig-13
as a cellular target of LIN-39 and MAB-5. LIN-39 establishes QR.x anterior polarity by binding to the
mig-13
promoter and promoting
mig-13
expression, whereas MAB-5 inhibits QL.x anterior polarity by associating with the
lin-39
promoter and downregulating
lin-39
and
mig-13
expression. Thus, MIG-13 links the Wnt signaling and Hox genes that guide migrations, to the actin cytoskeleton, which executes the motility response in neuronal migration.