Atomic-scale models on the gating mechanism of voltage-gated potassium channels (Kv) are based on linear interpolations between static structures of their initial and final state derived from crystallography and molecular dynamics simulations, and, thus, lack dynamic structural information. The lack of information on dynamics and intermediate states makes it difficult to associate the structural with the dynamic functional data obtained with electrophysiology. Although voltage-clamp fluorometry fills this gap, it is limited to sites extracellularly accessible, when the key region for gating is located at the cytosolic side of the channels. Here, we solved this problem by performing voltage-clamp fluorometry with a fluorescent unnatural amino acid. By using an orthogonal tRNAsynthetase pair, the fluorescent unnatural amino acid was incorporated in the Shaker voltage-gated potassium channel at key regions that were previously inaccessible. Thus, we defined which parts act independently and which parts act cooperatively and found pore opening to occur in two sequential transitions.Anap | two-color VCF V oltage-gated potassium channels (K V ) are essential for generating action potentials in the central nervous system and, when defective, are linked to severe familial diseases including cardiac arrhythmias and epilepsy. The voltage-sensing domains (VSD) of K V channels (transmembrane helices S1-S4; Fig. 1A) undergo a major conformational change upon membrane depolarization driven by the positive charges in the S4, which finally leads to opening of the pore domain (transmembrane helices S5-S6). Based on the consensus on the closed (initial) and open (final) state structures (1-6), the gating movement has been predicted; the S4 helix is projected to slide upward and tilt with respect to the membrane normal, and this movement pushes the S4-S5 linker and the S6 helix inward and closes the ion-conducting pore. However, this projection relies on linear interpolations between the closed and open state and lacks any information on dynamics or intermediate states.As a result, the projected movement does not suffice to explain fundamental characteristics of voltage sensor and pore domain kinetics, detected as "gating" and "ionic" currents, respectively. Such functional electrophysiology measurements revealed that, first, at least one intermediate state has to exist during voltage sensor movement (7) and that, second, voltage sensor movement and pore opening do not occur simultaneously. Each channel consists of four voltage sensors controlling a single central pore. It is thought that the four voltage sensors activate independently, and only after all four have activated, the central pore opens cooperatively (8,9). This mechanism implies that the energy generated by the movement of the first three voltage sensors has to be "conserved" in the system and has to be released to the pore during opening (10). The linear interpolations between closed and open structures leave the basis of both cooperativity and energy conservation un...